Integración de NDK en Android studio

Agrega el siguiente código en tu compilación.gradle

 sourceSets {
        main {
            jni.srcDirs = []
        }
    }

Esto puede resolver su problema..

R10e está bien en CLI con gradlew.

R10e está bien con la versión de gradle de AndroidStudio (gradl-2.4 en AS-1.3)

Mientras todavía utilice el enfoque mencione aquí por 'ph0b'. ver la muestra .gradle file ' y tenga en cuenta que IMO y tal vez en su opinión también-u todavía no quiere el proceso predeterminado COMO ndk( desea hacer un trabajo de configuración adicional y mantener el control total usted mismo). Los blogs Ph0b en ndk muestran cómo hacerlo todo usted mismo y no confiar en el android.mk gen'd por AS. Todavía uso mi propio exec para ndk y mis propios archivos make como explica ph0b. Todo bien con r10e / AS 1.3 en linux.

Mi CLI stdout....

:app:ndkBuild
make: Entering directory `/home/rob/src/speechnw/app/src/main/jni'
[armeabi-v7a] Compile thumb  : audioboo-ogg <= bitwise.c
[armeabi-v7a] Compile thumb  : audioboo-ogg <= framing.c
[armeabi-v7a] StaticLibrary  : libaudioboo-ogg.a
[armeabi-v7a] Compile thumb  : audioboo-flac <= bitmath.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= bitreader.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= cpu.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= crc.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= fixed.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= float.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= format.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= lpc.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= md5.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= memory.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= metadata_iterators.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= metadata_object.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= ogg_decoder_aspect.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= ogg_encoder_aspect.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= ogg_helper.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= ogg_mapping.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= stream_decoder.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= stream_encoder.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= stream_encoder_framing.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= window.c
[armeabi-v7a] Compile thumb  : audioboo-flac <= bitwriter.c
[armeabi-v7a] StaticLibrary  : libaudioboo-flac.a
[armeabi-v7a] Compile++ thumb: audioboo-native <= FLACStreamEncoder.cpp
[armeabi-v7a] Compile++ thumb: audioboo-native <= FLACStreamDecoder.cpp
[armeabi-v7a] Compile++ thumb: audioboo-native <= util.cpp
[armeabi-v7a] StaticLibrary  : libstdc++.a
[armeabi-v7a] SharedLibrary  : libaudioboo-native.so
[armeabi-v7a] Install        : libaudioboo-native.so => libs/armeabi-v7a/libaudioboo-native.so
[x86] Compile        : audioboo-ogg <= bitwise.c
[x86] Compile        : audioboo-ogg <= framing.c
[x86] StaticLibrary  : libaudioboo-ogg.a
[x86] Compile        : audioboo-flac <= bitmath.c
[x86] Compile        : audioboo-flac <= bitreader.c
[x86] Compile        : audioboo-flac <= cpu.c
[x86] Compile        : audioboo-flac <= crc.c
[x86] Compile        : audioboo-flac <= fixed.c
[x86] Compile        : audioboo-flac <= float.c
[x86] Compile        : audioboo-flac <= format.c
[x86] Compile        : audioboo-flac <= lpc.c
[x86] Compile        : audioboo-flac <= md5.c
[x86] Compile        : audioboo-flac <= memory.c
[x86] Compile        : audioboo-flac <= metadata_iterators.c
[x86] Compile        : audioboo-flac <= metadata_object.c
[x86] Compile        : audioboo-flac <= ogg_decoder_aspect.c
[x86] Compile        : audioboo-flac <= ogg_encoder_aspect.c
[x86] Compile        : audioboo-flac <= ogg_helper.c
[x86] Compile        : audioboo-flac <= ogg_mapping.c
[x86] Compile        : audioboo-flac <= stream_decoder.c
[x86] Compile        : audioboo-flac <= stream_encoder.c
[x86] Compile        : audioboo-flac <= stream_encoder_framing.c
[x86] Compile        : audioboo-flac <= window.c
[x86] Compile        : audioboo-flac <= bitwriter.c
[x86] StaticLibrary  : libaudioboo-flac.a
[x86] Compile++      : audioboo-native <= FLACStreamEncoder.cpp
[x86] Compile++      : audioboo-native <= FLACStreamDecoder.cpp
[x86] Compile++      : audioboo-native <= util.cpp
[x86] StaticLibrary  : libstdc++.a
[x86] SharedLibrary  : libaudioboo-native.so
[x86] Install        : libaudioboo-native.so => libs/x86/libaudioboo-native.so
make: Leaving directory `/home/rob/src/speechnw/app/src/main/jni'
:app:compileDebugJava